| GeneID | TF/Kinase Name | Chromosome | Start | End | strand | Descript |
| LITCHI001881 | PHD | Chr5 | 31364596;31364902 | 31368698 | + | Chromatin remodeling protein SHL |
| LITCHI003332 | PHD | Chr6 | 21618678 | 21622890 | + | PHD finger protein ING2 |
| LITCHI004202 | PHD | Chr6 | 31268855 | 31272840 | - | PHD and RING finger domain-containing protein 1 |
| LITCHI004965 | PHD | Chr14 | 5490217 | 5503531 | - | Methyl-CpG-binding domain-containing protein 9 |
| LITCHI004968 | PHD | Chr14 | 5518549 | 5531846 | - | Methyl-CpG-binding domain-containing protein 9 |
| LITCHI005964 | PHD | Chr14 | 17888006 | 17891038 | + | PHD finger protein MALE STERILITY 1 |
| LITCHI007327 | PHD | Chr11 | 11516203 | 11522540 | - | PHD finger protein At1g33420 |
| LITCHI007547 | PHD | Chr11 | 17416958 | 17421189 | - | Probable Histone-lysine N-methyltransferase ATXR5 |
| LITCHI008090 | PHD | Chr7 | 847015;847719 | 850427 | + | PHD finger protein MALE MEIOCYTE DEATH 1 |
| LITCHI008111 | PHD | Chr7 | 1120785;1121351 | 1127117 | - | Histone acetyltransferase HAC1 |
| LITCHI008660 | PHD | Chr7 | 11422244 | 11428929 | + | Increased DNA methylation 1 |
| LITCHI009789 | PHD | Chr7 | 30684604 | 30701842 | + | Protein FORGETTER 1 |
| LITCHI010827 | PHD | Chr8 | 9139097 | 9141289 | - | Increased DNA methylation 1 |
| LITCHI011311 | PHD | Chr8 | 17049190 | 17057409 | + | PHD finger protein EHD3 |
| LITCHI012318 | PHD | Chr2 | 5328621 | 5331097 | - | Histone-lysine N-methyltransferase ATXR6 |
| LITCHI012518 | PHD | Chr2 | 10809017 | 10821688 | - | Histone-lysine N-methyltransferase ATX5 |
| LITCHI012670 | PHD | Chr2 | 15966353 | 15967954 | - | Protein Jade-1 |
| LITCHI012915 | PHD | Chr2 | 21983357;21983429 | 21997308 | - | Increased DNA methylation 1 |
| LITCHI013852 | PHD | Chr2 | 36293678;36294426 | 36298715 | + | PHD finger protein At3g20280 |
| LITCHI013856 | PHD | Chr2 | 36318771;36319610 | 36324666 | + | PHD finger protein At3g20280 |
| LITCHI014793 | PHD | Chr1 | 5438087 | 5446670 | + | Increased DNA methylation 1 |
| LITCHI014796 | PHD | Chr1 | 5455735 | 5469235 | + | Increased DNA methylation 1 |
| LITCHI016443 | PHD | Chr1 | 35758133 | 35770290 | + | PHD and RING finger domain-containing protein 1 |
| LITCHI016913 | PHD | Chr1 | 41485423 | 41512450 | + | CHD3-type chromatin-remodeling factor PICKLE |
| LITCHI017785 | PHD | Chr1 | 49339666 | 49344033 | - | PHD finger protein 12 |
| LITCHI021344 | PHD | Chr12 | 21865022;21866579 | 21870279 | - | Chromatin remodeling protein EBS |
| LITCHI021725 | PHD | Chr10 | 483010 | 487961 | + | E3 ubiquitin-protein ligase ORTHRUS 2 |
| LITCHI021869 | PHD | Chr10 | 1671561 | 1685894 | + | Uncharacterized protein At4g10930 |
| LITCHI023299 | PHD | Chr10 | 16605214 | 16610345;16635694 | + | PHD and RING finger domain-containing protein C126.07c |
| LITCHI023959 | PHD | Chr13 | 9346183 | 9356293 | + | Origin of replication complex subunit 1A |
| LITCHI025159 | PHD | Chr13 | 23572911 | 23580366 | + | Increased DNA methylation 1 |
| LITCHI026536 | PHD | Chr3 | 10646510 | 10653090 | + | BRCT domain-containing protein At4g02110 |
| LITCHI026884 | PHD | Chr3 | 14111185 | 14121723 | + | Histone-lysine N-methyltransferase ATX3 |
| LITCHI028324 | PHD | Chr9 | 9984724 | 10002324 | + | Protein CHROMATIN REMODELING 4 |
| LITCHI029647 | PHD | Chr9 | 27488861 | 27505869 | - | Subtilisin-like protease SBT2.4 |