Search Result

On this page, GENE INFORMATION displays basic Information about the Gene ID being queried, including the chromosome location, starting and ending locations, plus or minus chain Information, and swissprot functional annotations. In addition, the CDS sequence, protein sequence and promoter sequence of the gene are also shown, and download links are provided.

Gene Information

GeneID	Chromosome	Start	End	strand	Descript
EVM0008807	ctg2606	24481	25230	-	Scarecrow-like transcription factor PAT1

Conserved Domain

Gene ID	Start	End	Accession	Domain	Type	Bit Score	E-value
EVM0008807.1	2	225	PF03514.17	GRAS	Family	297.1	1.90E-88

CDS sequence

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>EVM0008807.1
ATGCACATTCTATATGAGGTTTGCCCCTACTTCAAATTTGGATACATGTCTGCAAATGGA
GCCATTGCAGAAGCTATGAAGGATGAAGACAGAGTTCACATCATTGACTTCCAAATCTCC
CAGGGGAGTCAATGGATCACTCTTATCCAGGCATTCGCAGCTAGGCCTGGTGGGCCACCC
CACATTCGCATTACAGGCATTGACGATTCCACGTCAGCTTATGCCCGTGGAGGAGGGCTA
CATATAGTCGGAAGGAAGCTCTCTAAGCTTGCTGAGAAATTTAAGGTGCCATTCGAGTTC
CATGTTGCAACCATGTCTGGTTATGATGTTAAGCTGGAGAATCTTGGATTTCGACCCGGG
GAGGCTGTGGCTGTGAATTTCGCATTCATGCTCCACCACATGCCTGATGAGAGTGTCAGC
ACTGAAAATTTTAGGGACCGGCTGTTGATGCTTGTTAAGAGGCTGTCTCCCAAGGTTGTG
ACTCTTGTCGAGCAGGAATCTAACACTAACACTGCTGCATTCTACCCACGGTTCCTGGAG
GCATTGAACTATTACACAGCTATGTTTGAATCGATTGATGTGACCCTCACGAGGGATCAC
AAGGACCGGATCAACGTTGAACAGCACTGCCTAGCCAGGGATATCGTCAACATAATAGCT
TGTGAAGGACCGAGAGAGTGGAACGCCATGAACTTCTCGGGAAGTGGAAGTCTCGATTCA
AAATGGCAGGTTTTAGGCCATATCCTTTAA

Protein sequence

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>EVM0008807.1
MHILYEVCPYFKFGYMSANGAIAEAMKDEDRVHIIDFQISQGSQWITLIQAFAARPGGPP
HIRITGIDDSTSAYARGGGLHIVGRKLSKLAEKFKVPFEFHVATMSGYDVKLENLGFRPG
EAVAVNFAFMLHHMPDESVSTENFRDRLLMLVKRLSPKVVTLVEQESNTNTAAFYPRFLE
ALNYYTAMFESIDVTLTRDHKDRINVEQHCLARDIVNIIACEGPREWNAMNFSGSGSLDS
KWQVLGHIL*

mRNA sequence

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>EVM0008807.1
ATGCACATTCTATATGAGGTTTGCCCCTACTTCAAATTTGGATACATGTCTGCAAATGGA
GCCATTGCAGAAGCTATGAAGGATGAAGACAGAGTTCACATCATTGACTTCCAAATCTCC
CAGGGGAGTCAATGGATCACTCTTATCCAGGCATTCGCAGCTAGGCCTGGTGGGCCACCC
CACATTCGCATTACAGGCATTGACGATTCCACGTCAGCTTATGCCCGTGGAGGAGGGCTA
CATATAGTCGGAAGGAAGCTCTCTAAGCTTGCTGAGAAATTTAAGGTGCCATTCGAGTTC
CATGTTGCAACCATGTCTGGTTATGATGTTAAGCTGGAGAATCTTGGATTTCGACCCGGG
GAGGCTGTGGCTGTGAATTTCGCATTCATGCTCCACCACATGCCTGATGAGAGTGTCAGC
ACTGAAAATTTTAGGGACCGGCTGTTGATGCTTGTTAAGAGGCTGTCTCCCAAGGTTGTG
ACTCTTGTCGAGCAGGAATCTAACACTAACACTGCTGCATTCTACCCACGGTTCCTGGAG
GCATTGAACTATTACACAGCTATGTTTGAATCGATTGATGTGACCCTCACGAGGGATCAC
AAGGACCGGATCAACGTTGAACAGCACTGCCTAGCCAGGGATATCGTCAACATAATAGCT
TGTGAAGGACCGAGAGAGTGGAACGCCATGAACTTCTCGGGAAGTGGAAGTCTCGATTCA
AAATGGCAGGTTTTAGGCCATATCCTTTAA

Gene upstream 2000bp sequence (promoter)

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>EVM0008807.1 -  Up_Stream_Len 53 Force_Up_Stream_to_Chr_Start
AACTACAAAGCTTAAGATGCAAAGAACCAGCAAGCTCTGATCTCCTCTCTTAC

gDNA sequence

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>EVM0008807.1 GenomeSequence - 
ATGCACATTCTATATGAGGTTTGCCCCTACTTCAAATTTGGATACATGTCTGCAAATGGA
GCCATTGCAGAAGCTATGAAGGATGAAGACAGAGTTCACATCATTGACTTCCAAATCTCC
CAGGGGAGTCAATGGATCACTCTTATCCAGGCATTCGCAGCTAGGCCTGGTGGGCCACCC
CACATTCGCATTACAGGCATTGACGATTCCACGTCAGCTTATGCCCGTGGAGGAGGGCTA
CATATAGTCGGAAGGAAGCTCTCTAAGCTTGCTGAGAAATTTAAGGTGCCATTCGAGTTC
CATGTTGCAACCATGTCTGGTTATGATGTTAAGCTGGAGAATCTTGGATTTCGACCCGGG
GAGGCTGTGGCTGTGAATTTCGCATTCATGCTCCACCACATGCCTGATGAGAGTGTCAGC
ACTGAAAATTTTAGGGACCGGCTGTTGATGCTTGTTAAGAGGCTGTCTCCCAAGGTTGTG
ACTCTTGTCGAGCAGGAATCTAACACTAACACTGCTGCATTCTACCCACGGTTCCTGGAG
GCATTGAACTATTACACAGCTATGTTTGAATCGATTGATGTGACCCTCACGAGGGATCAC
AAGGACCGGATCAACGTTGAACAGCACTGCCTAGCCAGGGATATCGTCAACATAATAGCT
TGTGAAGGACCGAGAGAGTGGAACGCCATGAACTTCTCGGGAAGTGGAAGTCTCGATTCA
AAATGGCAGGTTTTAGGCCATATCCTTTAA